OldAn old but remains worthwhile: http://www.useit.com/alertbox/20030224.htmlarticle by Nielsen about multiple searches
The single most important thing Nielsen says is, "What matters, though, is not the implementation, but the user experience.":
What matters [...] is not the implementation, but the user experience.
Regarding your observation about different datasources,: if that is the case, it would be relatively easy to combine a single search box with a datasource selector (e.g., one search box but a selector with options like []Search Users []Search documents []Search Projects).