You have to decide what is more important for a company and then what is more representative for that company's website: the logo or the navigation.
The positioning of the logo in the top left corner is not a rule set in stone, it's a result of the research that tells us that the eye movement on a website usually starts from the left side. You need to read more on eye movement patters, especially about the F-pattern which is relevant in this case. The bottom line is that if you want the logo to be viewed first, then it would be a good idea to place it on the left side.
But, if you acknowledge this and still want to do something else, to be a little different, you could try to change things. I am sure the visitors will still see the logo.